Transcript: CFAP58-DT:7

Basic information

LNCipedia transcript ID: CFAP58-DT:7 
HGNC Gene Symbol: CFAP58-DT    
HGNC Full Gene Name: CFAP58 divergent transcript
Ensembl Gene ID: ENSG00000231233
Ensembl Transcript ID: ENST00000435434
Location (hg38): chr10:104351591-104353575
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 795 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018036; ENST00000435434.1; RP11-127L20.6-001; OTTHUMT00000050209.1; NONHSAT016234
Alternative gene names: XLOC_008937; linc-ITPRIP-1; ENSG00000231233.1; RP11-127L20.6; OTTHUMG00000019005.1; CCDC147-AS1; CFAP58-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.9896 non-coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CFAP58-DT:7 no no no no

Available literature

  1. Xie (2018), LncITPRIP-1 Positively Regulates Innate Immune Response through Promoting Oligomerization and Activation of MDA5., J. Virol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITPRIP-1:1
3.1 lnc-ITPRIP-1:1
4.0 CFAP58-AS1:1
4.1 CFAP58-AS1:1
5.0 CFAP58-AS1:1
5.1 CFAP58-DT:2
5.2 CFAP58-DT:7