Transcript: CERNA2:5

Basic information

LNCipedia transcript ID: CERNA2:5 
LNCipedia gene ID: CERNA2
Location (hg38): chr10:84167230-84172076
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1855 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017740; NONHSAT015316
Alternative gene names: XLOC_008878; linc-DYDC1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 51.8273 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CERNA2:5 no no no no

Available literature

  1. Liu (2017), Effects of LncRNA-HOST2 on cell proliferation, migration, invasion and apoptosis of human hepatocellular carcinoma cell line SMMC-7721., Biosci. Rep.
  2. Gao (2015), LncRNA-HOST2 regulates cell biological behaviors in epithelial ovarian cancer through a mechanism involving microRNA let-7b., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRIT2-1:2
3.1 lnc-LRIT2-1:2
4.0 lnc-LRIT2-1:2
4.1 lnc-LRIT2-1:2
5.0 lnc-LRIT2-1:2
5.1 CERNA2:2
5.2 CERNA2:5