Transcript: CEBPA-DT:18

Basic information

LNCipedia transcript ID: CEBPA-DT:18 
LNCipedia gene ID: CEBPA-DT
Location (hg38): chr19:33302889-33305798
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2057 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026994; NONHSAT064247
Alternative gene names: XLOC_013042; linc-CEBPG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.3339 non-coding 
CPAT coding probability 15.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CEBPA-DT:18 no no no no

Available literature

  1. Ke (2017), The combination of circulating long noncoding RNAs AK001058, INHBA-AS1, MIR4435-2HG, and CEBPA-AS1 fragments in plasma serve as diagnostic markers for gastric cancer., Oncotarget
  2. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEBPG-1:1
3.1 lnc-CEBPG-1:1
4.0 CEBPA-AS1:3
4.1 CEBPA-AS1:3
5.0 CEBPA-AS1:3
5.1 CEBPA-DT:8
5.2 CEBPA-DT:18