Transcript: CDKN2B-AS1:78

Basic information

LNCipedia transcript ID: CDKN2B-AS1:78 
HGNC Gene Symbol: CDKN2B-AS1    
HGNC Full Gene Name: CDKN2B antisense RNA 1
Ensembl Gene ID: ENSG00000240498
Ensembl Transcript ID: ENST00000644233
Location (hg38): chr9:22118968-22120713
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1653 bp
Exons: 2
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000644233.1
Alternative gene names: ENSG00000240498.7; CDKN2B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -120.8046 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDKN2B-AS1:78 no no no no

Available literature

  1. Aguilo (2016), Long Non-coding RNA ANRIL and Polycomb in Human Cancers and Cardiovascular Disease., Curr. Top. Microbiol. Immunol.
  2. Hu (2016), The plasma lncRNA acting as fingerprint in non-small-cell lung cancer., Tumour Biol.
  3. Iranpour (2016), Expression analysis of four long noncoding RNAs in breast cancer., Tumour Biol.
  4. Kotake (2016), Oncogenic Ras influences the expression of multiple lncRNAs., Cytotechnology
  5. Naemura (2016), ANRIL regulates the proliferation of human colorectal cancer cells in both two- and three-dimensional culture., Mol. Cell. Biochem.
  6. Zhou (2016), Long non-coding RNA ANRIL regulates inflammatory responses as a novel component of NF-κB pathway., RNA Biol
  7. Bida (2015), A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel., Oncotarget
  8. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  9. Carter (2015), Circulating long noncoding RNA GAS5 levels are correlated to prevalence of type 2 diabetes mellitus., BBA Clin
  10. Ding (2015), Long non-coding RNA Loc554202 induces apoptosis in colorectal cancer cells via the caspase cleavage cascades., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 CDKN2B-AS1:78
5.1 CDKN2B-AS1:78
5.2 CDKN2B-AS1:78

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