Transcript: CDH23-AS1:2

Basic information

LNCipedia transcript ID: CDH23-AS1:2 
HGNC Gene Symbol: CDH23-AS1    
HGNC Full Gene Name: CDH23 antisense RNA 1
Ensembl Gene ID: ENSG00000223817
Ensembl Transcript ID: ENST00000428918
Location (hg38): chr10:71508153-71511873
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 378 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428918.1; CDH23-AS1-001; OTTHUMT00000048547.1; NONHSAT013898
Alternative gene names: ENSG00000223817.1; CDH23-AS1; OTTHUMG00000018425.1; bA327E2.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -509.9297 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDH23-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf105-1:1
4.0 CDH23-AS1:2
4.1 CDH23-AS1:2
5.0 CDH23-AS1:2
5.1 CDH23-AS1:2
5.2 CDH23-AS1:2