Transcript: CD27-AS1:20

Basic information

LNCipedia transcript ID: CD27-AS1:20 
LNCipedia gene ID: CD27-AS1
Location (hg38): chr12:6439158-6447773
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1504 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000417058; ENST00000417058.2; CD27-AS1-005; OTTHUMT00000399250.1
Alternative gene names: ENSG00000215039; AC005840.1; ENSG00000215039.2; CD27-AS1; OTTHUMG00000168315.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.021 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CD27-AS1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAMP1-1:9
3.1 lnc-VAMP1-1:9
4.0 CD27-AS1:20
4.1 CD27-AS1:20
5.0 CD27-AS1:20
5.1 CD27-AS1:20
5.2 CD27-AS1:20