Transcript: CCDC39-AS1:3

Basic information

LNCipedia transcript ID: CCDC39-AS1:3 
LNCipedia gene ID: CCDC39-AS1
Location (hg38): chr3:180679568-180685838
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 638 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000243187.1|FTMT21100061080.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -471.4257 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC39-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CCDC39-AS1:3
5.0 CCDC39-AS1:3
5.1 CCDC39-AS1:3
5.2 CCDC39-AS1:3