Transcript: CCDC18-AS1:24

Basic information

LNCipedia transcript ID: CCDC18-AS1:24 
LNCipedia gene ID: CCDC18-AS1
Location (hg38): chr1:93311407-93338665
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 891 bp
Exons: 6
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001585; NONHSAT004515
Alternative gene names: XLOC_000918; linc-TMED5; ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.0438 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:24 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMED5-1:12
3.1 lnc-TMED5-1:16
4.0 CCDC18-AS1:24
4.1 CCDC18-AS1:24
5.0 CCDC18-AS1:24
5.1 CCDC18-AS1:24
5.2 CCDC18-AS1:24