Transcript: CCAT2:3
Basic information
LNCipedia transcript ID: CCAT2:3
HGNC Gene Symbol: CCAT2
HGNC Full Gene Name:
colon cancer associated transcript 2
Ensembl Gene ID:
ENSG00000280997
Ensembl Transcript ID:
ENST00000630920
RefSeq ID:
NR_109834
Location (hg38): chr8:127400399-127402150
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1752 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109834; ENST00000630920.1; NR_109834.1
Alternative gene names: ENSG00000280997.1; CCAT2
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Locus conservation? | ![]() |
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CCAT2:3 | no | no | no | no |
Available literature
- Thorenoor (2016), Long non-coding RNA ZFAS1 interacts with CDK1 and is involved in p53-dependent cell cycle control and apoptosis in colorectal cancer., Oncotarget
- Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
- Al-Tassan (2015), A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer., Sci Rep
- Cai (2015), Long noncoding RNA CCAT2 promotes breast tumor growth by regulating the Wnt signaling pathway., Onco Targets Ther
- Qiu (2015), A novel lncRNA, LUADT1, promotes lung adenocarcinoma proliferation via the epigenetic suppression of p27., Cell Death Dis
- Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
- Richards (2015), A functional variant in HOXA11-AS, a novel long non-coding RNA, inhibits the oncogenic phenotype of epithelial ovarian cancer., Oncotarget
- Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci
- Wang (2015), Long non-coding RNA CCAT2 is up-regulated in gastric cancer and associated with poor prognosis., Int J Clin Exp Pathol
- Ye (2015), Expression of lncRNA-CCAT1, E-cadherin and N-cadherin in colorectal cancer and its clinical significance., Int J Clin Exp Med
- Zhang (2015), Elevated expression of CCAT2 is associated with poor prognosis in esophageal squamous cell carcinoma., J Surg Oncol
- Hu (2014), A functional genomic approach identifies FAL1 as an oncogenic long noncoding RNA that associates with BMI1 and represses p21 expression in cancer., Cancer Cell
- Qiu (2014), CCAT2 is a lung adenocarcinoma-specific long non-coding RNA and promotes invasion of non-small cell lung cancer., Tumour Biol.
- Ling (2013), CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer., Genome Res.
- Ling (2013), MicroRNAs and other non-coding RNAs as targets for anticancer drug development., Nat Rev Drug Discov
- Redis (2013), CCAT2, a novel long non-coding RNA in breast cancer: expression study and clinical correlations., Oncotarget
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
3.1 | lnc-POU5F1B-8:1 |
4.0 | lnc-POU5F1B-8:1 |
4.1 | lnc-POU5F1B-8:1 |
5.0 | lnc-POU5F1B-8:1 |
5.1 | CCAT2:2 |
5.2 | CCAT2:3 |