Transcript: CBR3-AS1:49

Basic information

LNCipedia transcript ID: CBR3-AS1:49 
LNCipedia gene ID: CBR3-AS1
Ensembl Gene ID: ENSG00000230212
Ensembl Transcript ID: ENST00000535199
RefSeq ID: NR_040084
Location (hg38): chr21:36069642-36126640
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1221 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000535199.1; AP000688.14-002; OTTHUMT00000439311.2; NONHSAT081938; NR_040084; ENST00000535199.5; NR_040084.1
Alternative gene names: ENSG00000230212.2; AP000688.14; OTTHUMG00000086616.3; ENSG00000230212.6; PlncRNA-1; AP000688.1; LOC100133286


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.3137 non-coding 
CPAT coding probability 97.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CBR3-AS1:49 yes no no no

Available literature

  1. Song (2018), Long Noncoding RNA PlncRNA-1 Promotes Colorectal Cancer Cell Progression by Regulating the PI3K/Akt Signaling Pathway., Oncol. Res.
  2. Liu (2015), Construction of a lncRNA-PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer., Mol Biosyst
  3. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  4. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  5. Wang (2014), Upregulation of the long non-coding RNA PlncRNA-1 promotes esophageal squamous carcinoma cell proliferation and correlates with advanced clinical stage., Dig. Dis. Sci.
  6. Cui (2013), The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor., Urol. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SETD4-2:1
4.0 lnc-SETD4-2:1
4.1 CBR3-AS1:49
5.0 CBR3-AS1:49
5.1 CBR3-AS1:49
5.2 CBR3-AS1:49