Transcript: CATIP-AS1:1

Basic information

LNCipedia transcript ID: CATIP-AS1:1 
LNCipedia gene ID: CATIP-AS1
RefSeq ID: NR_110573
Location (hg38): chr2:218366665-218367902
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110573; NR_110573.1
Alternative gene names: ; CATIP-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 53.7558 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CATIP-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMBIM1-2:4
4.0 CATIP-AS1:1
4.1 CATIP-AS1:1
5.0 CATIP-AS1:1
5.1 CATIP-AS1:1
5.2 CATIP-AS1:1