Transcript: CASC22:28

Basic information

LNCipedia transcript ID: CASC22:28 
LNCipedia gene ID: CASC22
Location (hg38): chr16:52271685-52280298
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 659 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT142523
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.5986 non-coding 
CPAT coding probability 4.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC22:28 no no no no

Available literature

  1. Li (2014), A polymorphism rs12325489C>T in the lincRNA-ENST00000515084 exon was found to modulate breast cancer risk via GWAS-based association analyses., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHD9-5:13
4.0 lnc-CHD9-5:13
4.1 lnc-CHD9-5:13
5.0 lnc-CHD9-5:13
5.1 CASC22:14
5.2 CASC22:28