Transcript: CASC11:10

Basic information

LNCipedia transcript ID: CASC11:10 
LNCipedia gene ID: CASC11
Location (hg38): chr8:127734608-127735233
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 626 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249375.3|FTMT23000006837.1
Alternative gene names: TCONS_00014535; LINC00990; CARLo-7; ENST00000518376


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -196.9976 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC11:10 no no no no

Available literature

  1. Yin (2017), Identification of long noncoding RNA expression profile in oxaliplatin-resistant hepatocellular carcinoma cells., Gene
  2. Kim (2014), Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CASC11:10
5.0 CASC11:10
5.1 CASC11:10
5.2 CASC11:10