Transcript: CARMN:5

Basic information

LNCipedia transcript ID: CARMN:5 
LNCipedia gene ID: CARMN
Location (hg38): chr5:149406877-149428674
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8396 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00009261
Alternative gene names: XLOC_004598; linc-ARHGEF37-2; CARMEN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.87 non-coding 
CPAT coding probability 11.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARMN:5 no no no no

Available literature

  1. Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  3. Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCYOX1L-1:2
3.1 lnc-PCYOX1L-2:2
4.0 CARMN:5
4.1 CARMN:5
5.0 CARMN:5
5.1 CARMN:5
5.2 CARMN:5