Transcript: CARMN:27

Basic information

LNCipedia transcript ID: CARMN:27 
LNCipedia gene ID: CARMN
Location (hg38): chr5:149430286-149432834
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2549 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT104509; ENST00000602315.1
Alternative gene names: ENSG00000269936.2; MIR145; ENSG00000269936.3; RP11-394O4.5; CARMEN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.1539 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARMN:27 no no no no

Available literature

  1. Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  3. Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCYOX1L-2:23
4.0 CARMN:27
4.1 CARMN:27
5.0 CARMN:27
5.1 CARMN:27
5.2 CARMN:27