Transcript: CARMN:10

Basic information

LNCipedia transcript ID: CARMN:10 
LNCipedia gene ID: CARMN
Location (hg38): chr5:149406878-149426394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3148 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000505254; TCONS_00009539; ENST00000505254.1; MIR143HG-001; OTTHUMT00000373587.1
Alternative gene names: ENSG00000249669; XLOC_004598; linc-ARHGEF37-2; RP11-394O4.2; ENSG00000249669.2; MIR143HG; OTTHUMG00000163464.3; CARMEN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.0987 non-coding 
CPAT coding probability 12.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARMN:10 no no no no

Available literature

  1. Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  3. Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCYOX1L-1:4
3.1 lnc-PCYOX1L-2:3
4.0 CARMN:10
4.1 CARMN:10
5.0 CARMN:10
5.1 CARMN:10
5.2 CARMN:10