Transcript: CARMN:1
Basic information
LNCipedia transcript ID: CARMN:1
HGNC Gene Symbol: CARMN
HGNC Full Gene Name:
cardiac mesoderm enhancer-associated non-coding RNA
Ensembl Gene ID:
ENSG00000249669
Ensembl Transcript ID:
ENST00000512096
Location (hg38): chr5:149406689-149424397
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512096; TCONS_00009538; ENST00000512096.1; MIR143HG-002; OTTHUMT00000373588.1; NONHSAT104491; ENST00000512096.5
Alternative gene names: ENSG00000249669; XLOC_004598; linc-ARHGEF37-2; RP11-394O4.2; ENSG00000249669.2; MIR143HG; OTTHUMG00000163464.3; ENSG00000249669.3; ENSG00000249669.7; CARMEN; ENSG00000249669.8; CARMN; ENSG00000249669.9
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| CARMN:1 | no | no | no | no |
Available literature
- Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
- Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
- Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-PCYOX1L-1:1 |
| 3.1 | lnc-PCYOX1L-2:1 |
| 4.0 | CARMN:1 |
| 4.1 | CARMN:1 |
| 5.0 | CARMN:1 |
| 5.1 | CARMN:1 |
| 5.2 | CARMN:1 |