Transcript: CALML3-AS1:5

Basic information

LNCipedia transcript ID: CALML3-AS1:5 
LNCipedia gene ID: CALML3-AS1
Location (hg38): chr10:5516930-5523177
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1845 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00017727
Alternative gene names: XLOC_008707; linc-CALML5-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.0944 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CALML3-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALML5-1:1
3.1 lnc-CALML5-2:5
4.0 CALML3-AS1:5
4.1 CALML3-AS1:5
5.0 CALML3-AS1:5
5.1 CALML3-AS1:5
5.2 CALML3-AS1:5