Transcript: CALML3-AS1:15

Basic information

LNCipedia transcript ID: CALML3-AS1:15 
LNCipedia gene ID: CALML3-AS1
Location (hg38): chr10:5506930-5513177
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1845 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc001iid_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.5493 non-coding 
CPAT coding probability 76.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CALML3-AS1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALML5-6:1
4.0 lnc-CALML5-6:1
4.1 CALML3-AS1:15
5.0 CALML3-AS1:15
5.1 CALML3-AS1:15
5.2 CALML3-AS1:15