Transcript: CALML3-AS1:13

Basic information

LNCipedia transcript ID: CALML3-AS1:13 
LNCipedia gene ID: CALML3-AS1
Location (hg38): chr10:5549628-5550884
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 995 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018419; NONHSAT011159
Alternative gene names: XLOC_008708; linc-CALML5-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.6764 non-coding 
CPAT coding probability 14.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CALML3-AS1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALML5-2:1
3.1 lnc-CALML5-3:1
4.0 lnc-CALML5-3:1
4.1 CALML3-AS1:13
5.0 CALML3-AS1:13
5.1 CALML3-AS1:13
5.2 CALML3-AS1:13