Transcript: CADM3-AS1:4

Basic information

LNCipedia transcript ID: CADM3-AS1:4 
HGNC Gene Symbol: CADM3-AS1    
HGNC Full Gene Name: CADM3 antisense RNA 1
Ensembl Gene ID: ENSG00000225670
Ensembl Transcript ID: ENST00000415675
Location (hg38): chr1:159194325-159202512
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5044 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415675.3
Alternative gene names: ENSG00000225670.4; CADM3-AS1; CTA-134P22.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 98.5248 coding 
CPAT coding probability 65.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CADM3-AS1:4 no no no no

Available literature

  1. Zhu (2014), Long noncoding RNA expression signatures of bladder cancer revealed by microarray., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CADM3-AS1:4
4.1 CADM3-AS1:4
5.0 CADM3-AS1:4
5.1 CADM3-AS1:4
5.2 CADM3-AS1:4