Transcript: CACNA1C-IT3:1

Basic information

LNCipedia transcript ID: CACNA1C-IT3:1 
HGNC Gene Symbol: CACNA1C-IT3    
HGNC Full Gene Name: CACNA1C intronic transcript 3
Ensembl Gene ID: ENSG00000256721
Ensembl Transcript ID: ENST00000542680
Location (hg38): chr12:2269776-2288937
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 622 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542680.1; CACNA1C-IT3-001; OTTHUMT00000398749.1; NONHSAT025453
Alternative gene names: ENSG00000256721.1; CACNA1C-IT3; OTTHUMG00000168201.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3625 non-coding 
CPAT coding probability 10.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CACNA1C-IT3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRTM2-4:1
4.0 CACNA1C-IT3:1
4.1 CACNA1C-IT3:1
5.0 CACNA1C-IT3:1
5.1 CACNA1C-IT3:1
5.2 CACNA1C-IT3:1