Transcript: CACNA1C-IT2:1

Basic information

LNCipedia transcript ID: CACNA1C-IT2:1 
HGNC Gene Symbol: CACNA1C-IT2    
HGNC Full Gene Name: CACNA1C intronic transcript 2
Ensembl Gene ID: ENSG00000256257
Ensembl Transcript ID: ENST00000541871
RefSeq ID: NR_046768
Location (hg38): chr12:2048352-2049463
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 589 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000541871.1; CACNA1C-IT2-001; OTTHUMT00000399354.1; NONHSAT025443; NR_046768.1
Alternative gene names: ENSG00000256257.1; CACNA1C-IT2; OTTHUMG00000168338.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.5432 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CACNA1C-IT2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRTM2-3:1
4.0 CACNA1C-IT2:1
4.1 CACNA1C-IT2:1
5.0 CACNA1C-IT2:1
5.1 CACNA1C-IT2:1
5.2 CACNA1C-IT2:1