Transcript: CACNA1C-AS2:1

Basic information

LNCipedia transcript ID: CACNA1C-AS2:1 
HGNC Gene Symbol: CACNA1C-AS2    
HGNC Full Gene Name: CACNA1C antisense RNA 2
Ensembl Gene ID: ENSG00000256271
Ensembl Transcript ID: ENST00000545526
RefSeq ID: NR_046579
Location (hg38): chr12:2668500-2672220
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 609 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000545526.1; CACNA1C-AS2-001; OTTHUMT00000398345.1; NONHSAT025464; NR_046579; NR_046579.1
Alternative gene names: ENSG00000256271.1; CACNA1C-AS2; OTTHUMG00000168138.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.3883 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CACNA1C-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRIP2-6:1
4.0 CACNA1C-AS2:1
4.1 CACNA1C-AS2:1
5.0 CACNA1C-AS2:1
5.1 CACNA1C-AS2:1
5.2 CACNA1C-AS2:1