Transcript: CACNA1C-AS1:4

Basic information

LNCipedia transcript ID: CACNA1C-AS1:4 
HGNC Gene Symbol: CACNA1C-AS1    
HGNC Full Gene Name: CACNA1C antisense RNA 1
Ensembl Gene ID: ENSG00000246627
Ensembl Transcript ID: ENST00000501371
Location (hg38): chr12:2676001-2691118
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2191 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501371; ENST00000501371.1; CACNA1C-AS1-001; OTTHUMT00000398346.1; ENST00000501371.5
Alternative gene names: ENSG00000246627; ENSG00000246627.2; CACNA1C-AS1; OTTHUMG00000168139.1; ENSG00000246627.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 406.9487 coding 
CPAT coding probability 19.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CACNA1C-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRIP2-3:1
3.1 lnc-NRIP2-5:3
4.0 CACNA1C-AS1:4
4.1 CACNA1C-AS1:4
5.0 CACNA1C-AS1:4
5.1 CACNA1C-AS1:4
5.2 CACNA1C-AS1:4