Transcript: C6orf47-AS1:1

Basic information

LNCipedia transcript ID: C6orf47-AS1:1 
HGNC Gene Symbol: C6orf47-AS1    
HGNC Full Gene Name: C6orf47 antisense RNA 1
Ensembl Gene ID: ENSG00000227198
Ensembl Transcript ID: ENST00000422049
Location (hg38): chr6:31658329-31660721
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 673 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422049.1; C6orf47-AS1-001; OTTHUMT00000127781.2; NONHSAT108813
Alternative gene names: ENSG00000227198.1; C6orf47-AS1; OTTHUMG00000057503.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.2884 non-coding 
CPAT coding probability 15.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C6orf47-AS1:1 no no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APOM-3:1
4.0 C6orf47-AS1:1
4.1 C6orf47-AS1:1
5.0 C6orf47-AS1:1
5.1 C6orf47-AS1:1
5.2 C6orf47-AS1:1