Transcript: BTG3-AS1:17

Basic information

LNCipedia transcript ID: BTG3-AS1:17 
LNCipedia gene ID: BTG3-AS1
Location (hg38): chr21:17612952-17616258
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3307 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT081289
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.9081 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BTG3-AS1:17 no no no no

Available literature

  1. Taniue (2016), ASBEL-TCF3 complex is required for the tumorigenicity of colorectal cancer cells., Proc. Natl. Acad. Sci. U.S.A.
  2. Yanagida (2013), ASBEL, an ANA/BTG3 antisense transcript required for tumorigenicity of ovarian carcinoma., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXADR-4:2
4.0 lnc-CXADR-4:2
4.1 lnc-CXADR-4:2
5.0 lnc-CXADR-4:2
5.1 BTG3-AS1:9
5.2 BTG3-AS1:17