Transcript: BNC2-AS1:14

Basic information

LNCipedia transcript ID: BNC2-AS1:14 
HGNC Gene Symbol: BNC2-AS1    
HGNC Full Gene Name: BNC2 antisense RNA 1
Ensembl Gene ID: ENSG00000234779
Ensembl Transcript ID: ENST00000450445
Location (hg38): chr9:16726814-16727524
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 428 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450445.1; RP11-62F24.2-001; OTTHUMT00000051779.1; NONHSAT130293
Alternative gene names: ENSG00000234779.1; RP11-62F24.2; OTTHUMG00000019591.1; AL450003.2; BNC2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -325.7054 non-coding 
CPAT coding probability 13.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BNC2-AS1:14 yes no no no

Available literature

  1. Liu (2017), Increased Expression of Long Noncoding RNA RP11-62F24.2 in Gastric Cancer and Its Clinical Significance., Clin. Lab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNTLN-2:1
4.0 lnc-CNTLN-2:1
4.1 lnc-CNTLN-2:1
5.0 lnc-CNTLN-2:1
5.1 BNC2-AS1:7
5.2 BNC2-AS1:14