Transcript: BLACAT1:10

Basic information

LNCipedia transcript ID: BLACAT1:10 
LNCipedia gene ID: BLACAT1
Location (hg38): chr1:205381378-205455954
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 637 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT008994
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -244.9545 non-coding 
CPAT coding probability 4.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BLACAT1:10 no no no no

Available literature

  1. He (2013), linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEMD1-1:2
4.0 lnc-LEMD1-1:2
4.1 lnc-LEMD1-1:2
5.0 lnc-LEMD1-1:2
5.1 BLACAT1:3
5.2 BLACAT1:10