Transcript: BANCR:6

Basic information

LNCipedia transcript ID: BANCR:6 
HGNC Gene Symbol: BANCR    
HGNC Full Gene Name: BRAF-activated non-protein coding RNA
Ensembl Gene ID: ENSG00000278910
Ensembl Transcript ID: ENST00000625062
Location (hg38): chr9:69296682-69311111
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 4
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625062.4
Alternative gene names: ENSG00000278910.4; BANCR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -192.3614 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BANCR:6 no no no no

Available literature

  1. Zheng (2016), BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor., Cancer Res Treat
  2. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  3. Jiang (2015), Long non-coding RNA BANCR promotes proliferation and migration of lung carcinoma via MAPK pathways., Biomed. Pharmacother.
  4. Li (2015), Increased expression of LncRNA BANCR is associated with clinical progression and poor prognosis in gastric cancer., Biomed. Pharmacother.
  5. Li (2015), Fentanyl inhibits the invasion and migration of colorectal cancer cells via inhibiting the negative regulation of Ets-1 on BANCR., Biochem. Biophys. Res. Commun.
  6. Liu (2015), Over-expression of lncRNA DANCR is associated with advanced tumor progression and poor prognosis in patients with colorectal cancer., Int J Clin Exp Pathol
  7. Nie (2015), Long noncoding RNA ANRIL promotes non-small cell lung cancer cell proliferation and inhibits apoptosis by silencing KLF2 and P21 expression., Mol. Cancer Ther.
  8. PLOS ONE Staff (2015), Correction: Long non-coding RNA BANCR promotes proliferation in malignant melanoma by regulating MAPK pathway activation., PLoS ONE
  9. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  10. Shi (2015), Downregulated Long Noncoding RNA BANCR Promotes the Proliferation of Colorectal Cancer Cells via Downregualtion of p21 Expression., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 BANCR:6
5.1 BANCR:6
5.2 BANCR:6

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