Transcript: BAALC-AS1:19

Basic information

LNCipedia transcript ID: BAALC-AS1:19 
LNCipedia gene ID: BAALC-AS1
RefSeq ID: NR_109954
Location (hg38): chr8:103156990-103172140
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 726 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109954; NR_109954.1
Alternative gene names: ; BAALC-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.2477 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BAALC-AS1:19 no no no no

Available literature

  1. Chen (2018), LncFZD6 initiates Wnt/β-catenin and liver TIC self-renewal through BRG1-mediated FZD6 transcriptional activation., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8orf56-1:17
4.0 BAALC-AS1:19
4.1 BAALC-AS1:19
5.0 BAALC-AS1:19
5.1 BAALC-AS1:19
5.2 BAALC-AS1:19