Transcript: ASAP1-IT1:1

Basic information

LNCipedia transcript ID: ASAP1-IT1:1 
HGNC Gene Symbol: ASAP1-IT1    
HGNC Full Gene Name: ASAP1 intronic transcript 1
RefSeq ID: NR_002765
Location (hg38): chr8:130295355-130296533
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1179 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT129152; NR_002765; NR_002765.2
Alternative gene names: HSPC054; NCRNA00050; ASAP1IT; ASAP1-IT; ASAP1-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.791 non-coding 
CPAT coding probability 7.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ASAP1-IT1:1 yes no no no

Available literature

  1. Yang (2017), Long noncoding RNA ASAP1-IT1 promotes cancer stemness and predicts a poor prognosis in patients with bladder cancer., Neoplasma
  2. Fu (2016), Long non-coding RNAs, ASAP1-IT1, FAM215A, and LINC00472, in epithelial ovarian cancer., Gynecol. Oncol.
  3. Zhang (2000), Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM49B-7:1
4.0 ASAP1-IT1:1
4.1 ASAP1-IT1:1
5.0 ASAP1-IT1:1
5.1 ASAP1-IT1:1
5.2 ASAP1-IT1:1