Transcript: ARHGEF3-AS1:1

Basic information

LNCipedia transcript ID: ARHGEF3-AS1:1 
HGNC Gene Symbol: ARHGEF3-AS1    
HGNC Full Gene Name: ARHGEF3 antisense RNA 1
Ensembl Gene ID: ENSG00000240198
Ensembl Transcript ID: ENST00000477246
RefSeq ID: NR_046572
Location (hg38): chr3:56940040-56960854
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 489 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000477246.1; ARHGEF3-AS1-001; OTTHUMT00000352458.1; NONHSAT090066; ENST00000477246.5; NR_046572.1
Alternative gene names: ENSG00000240198.1; ARHGEF3-AS1; OTTHUMG00000158863.2; ENSG00000240198.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -231.4795 non-coding 
CPAT coding probability 15.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ARHGEF3-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA12-1:1
4.0 ARHGEF3-AS1:1
4.1 ARHGEF3-AS1:1
5.0 ARHGEF3-AS1:1
5.1 ARHGEF3-AS1:1
5.2 ARHGEF3-AS1:1