Transcript: APOBEC3B-AS1:2

Basic information

LNCipedia transcript ID: APOBEC3B-AS1:2 
HGNC Gene Symbol: APOBEC3B-AS1    
HGNC Full Gene Name: APOBEC3B antisense RNA 1
Ensembl Gene ID: ENSG00000249310
Ensembl Transcript ID: ENST00000513758
Location (hg38): chr22:38991559-38998209
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 691 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513758.2; APOBEC3B-AS1-001; OTTHUMT00000321231.3; NONHSAT086744
Alternative gene names: ENSG00000249310.2; APOBEC3B-AS1; OTTHUMG00000151083.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.5477 non-coding 
CPAT coding probability 13.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APOBEC3B-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CBX6-1:1
4.0 APOBEC3B-AS1:2
4.1 APOBEC3B-AS1:2
5.0 APOBEC3B-AS1:2
5.1 APOBEC3B-AS1:2
5.2 APOBEC3B-AS1:2