Transcript: ADPGK-AS1:5

Basic information

LNCipedia transcript ID: ADPGK-AS1:5 
HGNC Gene Symbol: ADPGK-AS1    
HGNC Full Gene Name: ADPGK antisense RNA 1
Ensembl Gene ID: ENSG00000260898
Ensembl Transcript ID: ENST00000566745
Location (hg38): chr15:72785012-72792963
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 765 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566745.1; RP11-361M10.5-003; OTTHUMT00000422137.1; NONHSAT047126
Alternative gene names: ENSG00000260898.1; RP11-361M10.5; OTTHUMG00000173100.1; ADPGK-AS1; ENSG00000260898.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.2276 non-coding 
CPAT coding probability 11.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ADPGK-AS1:5 yes no no no

Available literature

  1. Song (2018), LncRNA ADPGK-AS1 promotes pancreatic cancer progression through activating ZEB1-mediated epithelial-mesenchymal transition., Cancer Biol. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BBS4-1:4
4.0 ADPGK-AS1:5
4.1 ADPGK-AS1:5
5.0 ADPGK-AS1:5
5.1 ADPGK-AS1:5
5.2 ADPGK-AS1:5