Transcript: ADAMTS9-AS2:6

Basic information

LNCipedia transcript ID: ADAMTS9-AS2:6 
HGNC Gene Symbol: ADAMTS9-AS2    
HGNC Full Gene Name: ADAMTS9 antisense RNA 2
Ensembl Gene ID: ENSG00000241684
Ensembl Transcript ID: ENST00000481312
Location (hg38): chr3:64685128-65011468
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1970 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000481312; ENST00000481312.1; ADAMTS9-AS2-001; OTTHUMT00000351916.1
Alternative gene names: ENSG00000241684; ADAMTS9-AS2; ENSG00000241684.1; OTTHUMG00000158725.1; ENSG00000241684.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.0059 non-coding 
CPAT coding probability 22.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ADAMTS9-AS2:6 yes no no no

Available literature

  1. Liu (2018), Upregulated lncRNA ADAMTS9-AS2 suppresses progression of lung cancer through inhibition of miR-223-3p and promotion of TGFBR3., IUBMB Life
  2. Yao (2014), A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATXN7-2:4
3.1 lnc-ATXN7-8:4
4.0 ADAMTS9-AS2:6
4.1 ADAMTS9-AS2:6
5.0 ADAMTS9-AS2:6
5.1 ADAMTS9-AS2:6
5.2 ADAMTS9-AS2:6