Transcript: ADAMTS9-AS2:23

Basic information

LNCipedia transcript ID: ADAMTS9-AS2:23 
LNCipedia gene ID: ADAMTS9-AS2
Location (hg38): chr3:64685108-64975536
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2384 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000241684.1|ENST00000474768.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -47.4569 non-coding 
CPAT coding probability 13.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ADAMTS9-AS2:23 yes no no no

Available literature

  1. Liu (2018), Upregulated lncRNA ADAMTS9-AS2 suppresses progression of lung cancer through inhibition of miR-223-3p and promotion of TGFBR3., IUBMB Life
  2. Yao (2014), A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 ADAMTS9-AS2:23
5.0 ADAMTS9-AS2:23
5.1 ADAMTS9-AS2:23
5.2 ADAMTS9-AS2:23