Transcript: ACTA2-AS1:1

Basic information

LNCipedia transcript ID: ACTA2-AS1:1 
HGNC Gene Symbol: ACTA2-AS1    
HGNC Full Gene Name: ACTA2 antisense RNA 1
Ensembl Gene ID: ENSG00000180139
Ensembl Transcript ID: ENST00000627669
Location (hg38): chr10:88932390-88933838
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 762 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000627669.1
Alternative gene names: ENSG00000180139.11; ACTA2-AS1; uc001kfo.1; ZXF1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -136.8807 non-coding 
CPAT coding probability 25.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ACTA2-AS1:1 yes no no no

Available literature

  1. Zhang (2014), Enhanced expression of long non-coding RNA ZXF1 promoted the invasion and metastasis in lung adenocarcinoma., Biomed. Pharmacother.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 ACTA2-AS1:1
4.1 ACTA2-AS1:1
5.0 ACTA2-AS1:1
5.1 ACTA2-AS1:1
5.2 ACTA2-AS1:1