Transcript: AATBC:8

Basic information

LNCipedia transcript ID: AATBC:8 
LNCipedia gene ID: AATBC
Location (hg38): chr21:43804704-43810497
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2706 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029167; NONHSAT082454
Alternative gene names: XLOC_014107; linc-CSTB-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.8164 non-coding 
CPAT coding probability 30.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AATBC:8 yes no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSTB-1:4
3.1 lnc-CSTB-1:5
4.0 AATBC:8
4.1 AATBC:8
5.0 AATBC:8
5.1 AATBC:8
5.2 AATBC:8