Transcript: AATBC:16

Basic information

LNCipedia transcript ID: AATBC:16 
LNCipedia gene ID: AATBC
Location (hg38): chr21:43805758-43812548
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4579 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000215458.4|ENST00000400385.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 28.644 non-coding 
CPAT coding probability 97.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
AATBC:16 no no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 AATBC:16
5.0 AATBC:16
5.1 AATBC:16
5.2 AATBC:16