Transcript: AATBC:1

Basic information

LNCipedia transcript ID: AATBC:1 
LNCipedia gene ID: AATBC
Location (hg38): chr21:43805820-43818763
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3132 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT082459
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.7935 non-coding 
CPAT coding probability 85.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
AATBC:1 no no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CSTB-1:11
4.0 AATBC:1
4.1 AATBC:1
5.0 AATBC:1
5.1 AATBC:1
5.2 AATBC:1