Gene: lnc-SLC39A11-1
Basic information
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg38): chr17:72323123-72640472
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 49
Transcripts
Transcript ID | Location (hg38) | Length |
---|---|---|
lnc-SLC39A11-1:1 | chr17:72598041-72640472 | 2265 bp |
lnc-SLC39A11-1:10 | chr17:72420718-72592665 | 773 bp |
lnc-SLC39A11-1:11 | chr17:72323158-72592355 | 379 bp |
lnc-SLC39A11-1:12 | chr17:72403322-72592340 | 1696 bp |
lnc-SLC39A11-1:13 | chr17:72428268-72470366 | 436 bp |
lnc-SLC39A11-1:14 | chr17:72404522-72445119 | 561 bp |
lnc-SLC39A11-1:15 | chr17:72427972-72431191 | 391 bp |
lnc-SLC39A11-1:16 | chr17:72404639-72431159 | 538 bp |
lnc-SLC39A11-1:18 | chr17:72421829-72423070 | 520 bp |
lnc-SLC39A11-1:19 | chr17:72403328-72423026 | 1731 bp |
lnc-SLC39A11-1:2 | chr17:72431164-72603508 | 467 bp |
lnc-SLC39A11-1:20 | chr17:72404151-72423026 | 908 bp |
lnc-SLC39A11-1:21 | chr17:72404660-72421224 | 475 bp |
lnc-SLC39A11-1:22 | chr17:72404264-72420723 | 577 bp |
lnc-SLC39A11-1:23 | chr17:72382955-72385123 | 757 bp |
lnc-SLC39A11-1:24 | chr17:72340382-72342571 | 788 bp |
lnc-SLC39A11-1:25 | chr17:72324434-72342571 | 974 bp |
lnc-SLC39A11-1:26 | chr17:72324468-72339572 | 409 bp |
lnc-SLC39A11-1:27 | chr17:72323165-72339572 | 227 bp |
lnc-SLC39A11-1:28 | chr17:72324434-72339572 | 544 bp |
lnc-SLC39A11-1:29 | chr17:72324063-72339567 | 657 bp |
lnc-SLC39A11-1:3 | chr17:72384302-72592804 | 1747 bp |
lnc-SLC39A11-1:30 | chr17:72323123-72325949 | 355 bp |
lnc-SLC39A11-1:31 | chr17:72323145-72325932 | 536 bp |
lnc-SLC39A11-1:32 | chr17:72387596-72593567 | 18746 bp |
lnc-SLC39A11-1:33 | chr17:72431127-72592767 | 663 bp |
lnc-SLC39A11-1:34 | chr17:72400719-72592453 | 6904 bp |
lnc-SLC39A11-1:35 | chr17:72553327-72554382 | 624 bp |
lnc-SLC39A11-1:36 | chr17:72323157-72400396 | 1129 bp |
lnc-SLC39A11-1:37 | chr17:72327999-72342571 | 564 bp |
lnc-SLC39A11-1:38 | chr17:72323165-72325478 | 466 bp |
lnc-SLC39A11-1:39 | chr17:72403329-72592800 | 2511 bp |
lnc-SLC39A11-1:4 | chr17:72384302-72592804 | 1716 bp |
lnc-SLC39A11-1:40 | chr17:72403329-72592800 | 2149 bp |
lnc-SLC39A11-1:41 | chr17:72323158-72592804 | 828 bp |
lnc-SLC39A11-1:42 | chr17:72384302-72592804 | 1716 bp |
lnc-SLC39A11-1:43 | chr17:72385280-72592804 | 769 bp |
lnc-SLC39A11-1:44 | chr17:72403322-72592804 | 2160 bp |
lnc-SLC39A11-1:45 | chr17:72403348-72592804 | 2112 bp |
lnc-SLC39A11-1:46 | chr17:72403348-72592804 | 2496 bp |
lnc-SLC39A11-1:47 | chr17:72383199-72423199 | 22298 bp |
lnc-SLC39A11-1:48 | chr17:72404151-72422925 | 807 bp |
lnc-SLC39A11-1:49 | chr17:72421829-72422925 | 375 bp |
lnc-SLC39A11-1:5 | chr17:72384321-72592804 | 1697 bp |
lnc-SLC39A11-1:50 | chr17:72401304-72422925 | 5532 bp |
lnc-SLC39A11-1:6 | chr17:72403322-72592804 | 2257 bp |
lnc-SLC39A11-1:7 | chr17:72403328-72592802 | 1956 bp |
lnc-SLC39A11-1:8 | chr17:72402953-72592792 | 2517 bp |
lnc-SLC39A11-1:9 | chr17:72420940-72592789 | 772 bp |
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
lnc-SLC39A11-1 | no | no | no | no |
Available literature
- Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell Rep
- Sun (2016), Long Intergenic Noncoding RNA 00511 Acts as an Oncogene in Non-small-cell Lung Cancer by Binding to EZH2 and Suppressing p57., Mol Ther Nucleic Acids
- Zheng (2016), Pancreatic cancer risk variant in LINC00673 creates a miR-1231 binding site and interferes with PTPN11 degradation., Nat. Genet.
- Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
- Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.