Gene: HAGLR
Basic information
LNCipedia gene ID: HAGLR
Location (hg38): chr2:176164051-176188962
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA_gene
Transcripts: 57
Transcripts
| Transcript ID | Location (hg38) | Length |
|---|---|---|
| HAGLR:1 | chr2:176176456-176188958 | 545 bp |
| HAGLR:10 | chr2:176176480-176188479 | 623 bp |
| HAGLR:11 | chr2:176172345-176188444 | 4537 bp |
| HAGLR:12 | chr2:176176186-176188269 | 945 bp |
| HAGLR:13 | chr2:176173189-176188269 | 3942 bp |
| HAGLR:14 | chr2:176172337-176179004 | 5813 bp |
| HAGLR:15 | chr2:176173195-176178284 | 4235 bp |
| HAGLR:16 | chr2:176173189-176178129 | 4086 bp |
| HAGLR:17 | chr2:176173189-176178129 | 3923 bp |
| HAGLR:18 | chr2:176173189-176178129 | 3905 bp |
| HAGLR:19 | chr2:176173189-176178129 | 3893 bp |
| HAGLR:2 | chr2:176173196-176188958 | 3805 bp |
| HAGLR:20 | chr2:176173189-176178129 | 3794 bp |
| HAGLR:21 | chr2:176173189-176178129 | 3782 bp |
| HAGLR:22 | chr2:176176472-176178125 | 636 bp |
| HAGLR:23 | chr2:176176386-176178125 | 581 bp |
| HAGLR:24 | chr2:176173277-176178090 | 3959 bp |
| HAGLR:25 | chr2:176176380-176178084 | 558 bp |
| HAGLR:26 | chr2:176176472-176178083 | 576 bp |
| HAGLR:27 | chr2:176176386-176178042 | 609 bp |
| HAGLR:28 | chr2:176176159-176177568 | 771 bp |
| HAGLR:29 | chr2:176174263-176177511 | 2610 bp |
| HAGLR:3 | chr2:176173189-176188958 | 3812 bp |
| HAGLR:30 | chr2:176173195-176188962 | 3810 bp |
| HAGLR:31 | chr2:176176456-176188962 | 549 bp |
| HAGLR:32 | chr2:176173195-176188551 | 3864 bp |
| HAGLR:33 | chr2:176173195-176188551 | 3794 bp |
| HAGLR:34 | chr2:176175430-176188551 | 1629 bp |
| HAGLR:35 | chr2:176175430-176188551 | 1600 bp |
| HAGLR:36 | chr2:176175430-176188551 | 1612 bp |
| HAGLR:37 | chr2:176175994-176188551 | 995 bp |
| HAGLR:38 | chr2:176176186-176188551 | 1227 bp |
| HAGLR:39 | chr2:176176480-176188551 | 695 bp |
| HAGLR:4 | chr2:176173189-176188572 | 4037 bp |
| HAGLR:40 | chr2:176176524-176188551 | 681 bp |
| HAGLR:41 | chr2:176173195-176178109 | 3897 bp |
| HAGLR:42 | chr2:176176159-176178109 | 1312 bp |
| HAGLR:43 | chr2:176176472-176178109 | 620 bp |
| HAGLR:44 | chr2:176173195-176178109 | 4060 bp |
| HAGLR:45 | chr2:176175430-176178109 | 1825 bp |
| HAGLR:46 | chr2:176176380-176178109 | 583 bp |
| HAGLR:47 | chr2:176176386-176178109 | 565 bp |
| HAGLR:48 | chr2:176176386-176178109 | 676 bp |
| HAGLR:49 | chr2:176176472-176178109 | 602 bp |
| HAGLR:5 | chr2:176173189-176188572 | 4007 bp |
| HAGLR:50 | chr2:176173674-176188958 | 3327 bp |
| HAGLR:51 | chr2:176173262-176188591 | 3767 bp |
| HAGLR:52 | chr2:176173233-176188546 | 3821 bp |
| HAGLR:53 | chr2:176175773-176188546 | 1322 bp |
| HAGLR:54 | chr2:176174262-176188531 | 2847 bp |
| HAGLR:55 | chr2:176173002-176188531 | 4183 bp |
| HAGLR:56 | chr2:176164051-176178099 | 465 bp |
| HAGLR:57 | chr2:176176476-176177568 | 454 bp |
| HAGLR:6 | chr2:176173189-176188572 | 3891 bp |
| HAGLR:7 | chr2:176173189-176188572 | 3821 bp |
| HAGLR:8 | chr2:176175994-176188540 | 984 bp |
| HAGLR:9 | chr2:176176524-176188531 | 661 bp |
Locus conservation
Available literature
- Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
- Li (2014), starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data., Nucleic Acids Res.
- Yarmishyn (2014), HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome., BMC Genomics
- Batagov (2013), Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells., BMC Syst Biol
- Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife