Transcript: lnc-TSPAN18-1:2

Basic information

LNCipedia transcript ID: lnc-TSPAN18-1:2 
LNCipedia gene ID: lnc-TSPAN18-1
Ensembl Gene ID: ENSG00000254654
Ensembl Transcript ID: ENST00000525114
RefSeq ID: NR_026681
Location (hg38): chr11:44973902-44978028
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1239 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000525114; ENST00000525114.1; AC068858.1-001; OTTHUMT00000389926.1; NONHSAT019000; NR_026681.1
Alternative gene names: ENSG00000254654; AC068858.1; ENSG00000254654.1; OTTHUMG00000166477.1; LOC221122


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.5936 non-coding 
CPAT coding probability 5.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN18-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN18-1:2
3.1 lnc-TSPAN18-1:2
4.0 lnc-TSPAN18-1:2
4.1 lnc-TSPAN18-1:2
5.0 lnc-TSPAN18-1:2
5.1 lnc-OR5L2-97:2
5.2 lnc-TSPAN18-1:2