Transcript: lnc-TSPAN14-2:3

Basic information

LNCipedia transcript ID: lnc-TSPAN14-2:3 
LNCipedia gene ID: lnc-TSPAN14-2
Location (hg38): chr10:80529569-80533481
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2960 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018255; NONHSAT015262
Alternative gene names: XLOC_008535; linc-SH2D4B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.3215 non-coding 
CPAT coding probability 2.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN14-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH2D4B-2:1
3.1 lnc-SH2D4B-2:1
4.0 lnc-SH2D4B-2:1
4.1 lnc-SH2D4B-2:1
5.0 lnc-SH2D4B-2:1
5.1 lnc-MTRNR2L5-263:1
5.2 lnc-TSPAN14-2:3