Transcript: lnc-SLC39A11-1:7
Basic information
LNCipedia transcript ID: lnc-SLC39A11-1:7
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg38): chr17:72403328-72592802
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1956 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000457958; TCONS_00025253; NONHSAT055689
Alternative gene names: ENSG00000227036; XLOC_012568; linc-ABCA5-3; AC007639.1
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
lnc-SLC39A11-1:7 | no | no | no | no |
Available literature
- Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell Rep
- Sun (2016), Long Intergenic Noncoding RNA 00511 Acts as an Oncogene in Non-small-cell Lung Cancer by Binding to EZH2 and Suppressing p57., Mol Ther Nucleic Acids
- Zheng (2016), Pancreatic cancer risk variant in LINC00673 creates a miR-1231 binding site and interferes with PTPN11 degradation., Nat. Genet.
- Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
- Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
1.3 | lnc-SLC39A11-2:4 |
3.1 | lnc-SLC39A11-1:7 |
4.0 | lnc-SLC39A11-1:7 |
4.1 | lnc-SLC39A11-1:7 |
5.0 | lnc-SLC39A11-1:7 |
5.1 | lnc-GRB2-54:14 |
5.2 | lnc-SLC39A11-1:7 |