Transcript: lnc-HOMER2-2:2

Basic information

LNCipedia transcript ID: lnc-HOMER2-2:2 
LNCipedia gene ID: lnc-HOMER2-2
Location (hg38): chr15:82958130-82985868
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1261 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000500334; TCONS_00023251; NONHSAT047876
Alternative gene names: ENSG00000245763; XLOC_011554; linc-HOMER2; AC022558.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.9897 non-coding 
CPAT coding probability 3.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOMER2-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C15orf40-1:1
3.1 lnc-C15orf40-2:1
4.0 lnc-HOMER2-2:2
4.1 lnc-HOMER2-2:2
5.0 lnc-HOMER2-2:2
5.1 lnc-HOMER2-2:2
5.2 lnc-HOMER2-2:2