Transcript: TNFRSF14-AS1:18

Basic information

LNCipedia transcript ID: TNFRSF14-AS1:18 
HGNC Gene Symbol: TNFRSF14-AS1    
HGNC Full Gene Name: TNFRSF14 antisense RNA 1
Ensembl Gene ID: ENSG00000238164
Ensembl Transcript ID: ENST00000416860
Location (hg38): chr1:2549920-2557011
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3522 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416860; ENST00000416860.2; RP3-395M20.8-001; OTTHUMT00000002185.2; NONHSAT000448
Alternative gene names: ENSG00000238164; RP3-395M20.8; ENSG00000238164.2; OTTHUMG00000000818.3; ENSG00000238164.6; TNFRSF14-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.898 non-coding 
CPAT coding probability 56.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TNFRSF14-AS1:18 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HES5-1:2
3.1 lnc-HES5-1:2
4.0 lnc-HES5-1:2
4.1 lnc-HES5-1:2
5.0 lnc-HES5-1:2
5.1 TNFRSF14-AS1:3
5.2 TNFRSF14-AS1:18