Transcript: PIK3CD-AS2:1

Basic information

LNCipedia transcript ID: PIK3CD-AS2:1 
LNCipedia gene ID: PIK3CD-AS2
Location (hg38): chr1:9679800-9687574
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 983 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000415330; ENST00000415330.1; RP11-558F24.4-001; OTTHUMT00000004234.1; NONHSAT000816
Alternative gene names: ENSG00000231789; RP11-558F24.4; ENSG00000231789.1; OTTHUMG00000001449.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.4754 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PIK3CD-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf200-1:1
3.1 lnc-C1orf200-1:1
4.0 PIK3CD-AS2:1
4.1 PIK3CD-AS2:1
5.0 PIK3CD-AS2:1
5.1 PIK3CD-AS2:1
5.2 PIK3CD-AS2:1